HsaEX6037140 @ hg19
Exon Skipping
Gene
ENSG00000143776 | CDC42BPA
Description
CDC42 binding protein kinase alpha (DMPK-like) [Source:HGNC Symbol;Acc:1737]
Coordinates
chr1:227177566-227192812:-
Coord C1 exon
chr1:227192695-227192812
Coord A exon
chr1:227182524-227182681
Coord C2 exon
chr1:227177566-227182100
Length
158 bp
Sequences
Splice sites
3' ss Seq
GCCTGCATGATGTACTGTAGGGT
3' ss Score
5.23
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
AACCCTCGGCCTCAGGAAAGTCGGACAGTATTCAGTGGCTCAGTCAGTATTCCATCTATCACCAAATCCCGCCCTGAGCCAGGCCGCTCCATGAGTGCTAGCAGTGGCTTGTCAGCAA
Seq A exon
GGTCATCCGCACAGAATGGCAGCGCATTAAAGAGGGAATTCTCTGGAGGAAGCTACAGTGCCAAGCGGCAGCCCATGCCCTCCCCGTCAGAGGGCTCTTTGTCCTCTGGAGGCATGGACCAAGGAAGTGATGCCCCAGCGAGGGACTTTGACGGAGAG
Seq C2 exon
GACTCTGACTCTCCGAGGCATTCCACAGCTTCCAACAGTTCCAACCTAAGCAGCCCCCCAAGCCCAGCTTCACCCCGAAAAACCAAGAGCCTCTCCCTGGAGAGCACTGACCGCGGGAGCTGGGACCCGTGAGCTGCCTCAGCACTGGGACCTCTCGCTCTCCGCTCCCTGCCACTCGCCTCCTCTCACTTTCATCTCTTCCCTCCACCTCGCCTGCTCGGCCTGAAAGCCACCAGGGGCTGGCAGCAGTAGCAGGACAGGGATTCAGGAGTTCTGACGACACGACTCTCAGATCCACGCCCCCAGCCTAACAGCAACAACAAAGACAGACTTTCCGTAGCAGCTTAGATTAACGTTGATTTCATTCCATGCACTTAGAGTTGCTTTCAGTAACATTTTACCCCTACTCCCAAAGGTAGCTTAAATAGACAGATTACACAAATGTAAGTGATAAGAATAAGATTAGACAGATTTTGCTTTCACAGTAGAGTCTCATTATA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000143776-'49-53,'49-52,51-53=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0078623=PBD=PD(16.7=25.0)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTATCACCAAATCCCGCCCT
R:
TGAAAGTGAGAGGAGGCGAGT
Band lengths:
258-416
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)