BtaEX6068150 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000022777 | CDC42BPA
Description
Bos taurus CDC42 binding protein kinase alpha (DMPK-like) (CDC42BPA), mRNA. [Source:RefSeq mRNA;Acc:NM_001192937]
Coordinates
chr16:30708032-30711944:-
Coord C1 exon
chr16:30711827-30711944
Coord A exon
chr16:30709412-30709569
Coord C2 exon
chr16:30708032-30708770
Length
158 bp
Sequences
Splice sites
3' ss Seq
ACCTGAACCGTCTGCTGTAGGGT
3' ss Score
6.53
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
AACCCTCGGCCTCAGGAAAGTCGGACAGCATTCAGTGGCTCCGTCAGTATTCCGTCTATCACCAAATCCCGCCCTGAACCCGGTCGCTCCATGAGCGCCAGCAGTGGCCTATCAGCAA
Seq A exon
GGTCATCTGCACAGAATGGCAGTGCGTTAAAGAGAGAATTCTCTGGAGGCAGCTACAGTGCAAAGCGGCAGCCCATGCCCTCCCCATCGGAGGGCTCGCTGTCTTCGGGAGGCATGGACCAGGGAAGTGACGCCCCAGCACGGGACTATGACGGAGAG
Seq C2 exon
GACTCTGATTCTCCGCGGCATTCCACGGCTTCTAACAGTTCCAACCTGAGCAGTCCTCCCAGCCCAGTGTCGCCCCGGAAGACCAAGAGCCTATCTCTGGAGAGCACAGACCGCGGGAGCTGGGACCCGTGAGCGGGAGCTGGGACCGTGAGCAGCCTCCGCGCTCAGACACTCTGGGCTCCCCTCCACTGCCCCCCTCCTCTCACTGTCATCTCTTCCCCAACCTCTGCCTGAAGATGCCAGGGCCGACTGCAGTAGCAGGGCTGGGGTTCGGGAATTCTGCCTCTAGGACTTTCATCCACGCCCGCTTCGACTTAACAGCAACAACTATAAAGGCAGACTTTCATTGAGCAGCTTAGATGAATACTGATTTCATTTCATACACTTAGCGTTGCTTTCTATTTCACCCTTCCCCTAAAAAGGTAGCTTAAGTAGACAGATTCCACACATGTAAGTGATAAGAATAAGATTAGACAGACATTGTTTTCACAGTAGAGTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000022777-'52-66,'52-65,53-66=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCAGTGGCCTATCAGCAA
R:
GGCAGAGGTTGGGGAAGAGAT
Band lengths:
251-409
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]