DreEX6046439 @ danRer10
Exon Skipping
Gene
ENSDARG00000016464 | si:ch211-89p3.3
Description
si:ch211-89p3.3 [Source:ZFIN;Acc:ZDB-GENE-041014-372]
Coordinates
chr20:35295154-35303401:+
Coord C1 exon
chr20:35295154-35295271
Coord A exon
chr20:35295779-35295936
Coord C2 exon
chr20:35301599-35303401
Length
158 bp
Sequences
Splice sites
3' ss Seq
CTGGTGGTCTGTAATGTCAGGGT
3' ss Score
2.76
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
AATGTACGTGCTCAGGACAACCGTGCTGGATTCAGCGGCTCCGTCAGCATCCCCTCCATTACAAAAAACAGAGCAGAACCAGGGCGATCCATGAGCGCAAGCAGTGGCCTAGGAATGC
Seq A exon
GGTCGTCCTCTCAGAACGGCAGTGCTCTAAGGAGGGAGCTGTCCAGCGGCAGCTACAGCTCTAAACGGCAGACCATGACTTCACCCTCCGAGAGTTCGCTGTCATCAGGAGGAGGGATGGACGTGGGGGAAGCGCCGCTCTCTCAGTTTGACAGAGAG
Seq C2 exon
GACTCTGATTCGCCGCGGCACTCCACTGCCTCCAACAGCTCCACCTTCAGCAGCCCGCCGAGCCCCGCCTCCCCACACAAGACAAAGTCCCTCTCATTGGAGAGCACAGACCGCACCGCCTGGGACACATGATGGACTCAACTGTGAGCCAATCACAACAAACTCAAGTCTGCCTGTCACAGTGCTCCGCCCCCCTCCCATACAGCTGCACTGCAGGCCCCTCCAACTTAATTTGCATAAAGGCTCACCACTGGAGAACATCCCAAGGAGAAACCATCCCAACGTTGAATGCGTTCGCTAAAGTTTTACCACTTCAGATTTGGAAGAAAAGCCAGCAGATTTTATCGTGACTGGTGTTTGTATATAGACTTGGTTAAGGGTGAACTTTTATTTATTTATCATTCAGCCATTTCAAGGTGGAAAATACAGTCACGTCCCTCACTCTGCTCTGGACCGTACTGGATTGGCGATTCCATTATAGGATCCCACTAATTAACCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000016464-'41-45,'41-43,42-45=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGCAGTGGCCTAGGAATGC
R:
AATTAAGTTGGAGGGGCCTGC
Band lengths:
254-412
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]