MmuEX6029629 @ mm10
Exon Skipping
Gene
ENSMUSG00000026490 | Cdc42bpa
Description
CDC42 binding protein kinase alpha [Source:MGI Symbol;Acc:MGI:2441841]
Coordinates
chr1:180151160-180161697:+
Coord C1 exon
chr1:180151160-180151277
Coord A exon
chr1:180159606-180159723
Coord C2 exon
chr1:180161540-180161697
Length
118 bp
Sequences
Splice sites
3' ss Seq
TCCTCTCCTTTGTGTTTTAGAAC
3' ss Score
11.52
5' ss Seq
CACGTAAGT
5' ss Score
10.16
Exon sequences
Seq C1 exon
GGAGATGCTACGAGATCCAGAAATGAGAAATAAATTAATTTCTAACCCAACTAATTTTAACCACATAGCACACATGGGTCCTGGAGATGGAATACAGATCCTAAAAGACCTGCCCATG
Seq A exon
AACCCACGGCCTCAGGAAAGCCGGACAGTATTCAGTGGCTCCGTCAGTATTCCCTCCATCACCAAGTCCCGCCCTGAGCCAGGCCGCTCCATGAGTGCCAGCAGCGGCCTGTCTGCAC
Seq C2 exon
GGTCGTCAGCCCAGAATGGCAGTGCACTAAAGAGGGAATTCTCTGGAGGAAGCTATAACACAAAGCGACAGCCCATGCCCTCTCCCTCGGAGGGCTCTTTGTCATCAGGAGGCATGGACCAAGGAAGTGACGCCCCTGCGAGGGACTATGATGGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026490-'81-95,'81-93,86-95
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.988 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGATGCTACGAGATCCAGA
R:
CACTTCCTTGGTCCATGCCTC
Band lengths:
247-365
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types