DreEX6046440 @ danRer10
Exon Skipping
Gene
ENSDARG00000016464 | si:ch211-89p3.3
Description
si:ch211-89p3.3 [Source:ZFIN;Acc:ZDB-GENE-041014-372]
Coordinates
chr20:35292578-35295936:+
Coord C1 exon
chr20:35292578-35292695
Coord A exon
chr20:35295154-35295271
Coord C2 exon
chr20:35295779-35295936
Length
118 bp
Sequences
Splice sites
3' ss Seq
TTTCTTTGTATAACCGGTAGAAT
3' ss Score
4.31
5' ss Seq
TGCGTAAGC
5' ss Score
5.73
Exon sequences
Seq C1 exon
AGAAATGTTGAAAGATCCTGAGAGGAGGAACAAGCTGATCTCAAATCCTACAAATTTTAACCATGTGGCTCATATGGGACCTGGAGATGGCATGCAGATACTCAGAGACCTGCCAATG
Seq A exon
AATGTACGTGCTCAGGACAACCGTGCTGGATTCAGCGGCTCCGTCAGCATCCCCTCCATTACAAAAAACAGAGCAGAACCAGGGCGATCCATGAGCGCAAGCAGTGGCCTAGGAATGC
Seq C2 exon
GGTCGTCCTCTCAGAACGGCAGTGCTCTAAGGAGGGAGCTGTCCAGCGGCAGCTACAGCTCTAAACGGCAGACCATGACTTCACCCTCCGAGAGTTCGCTGTCATCAGGAGGAGGGATGGACGTGGGGGAAGCGCCGCTCTCTCAGTTTGACAGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000016464-'40-43,'40-41,41-43=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0078623=PBD=WD(100=52.5)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTGAGAGGAGGAACAAGCT
R:
CTGTCAAACTGAGAGAGCGGC
Band lengths:
257-375
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]