GgaEX0013463 @ galGal3
Exon Skipping
Gene
ENSGALG00000009158 | CDC42BPA
Description
NA
Coordinates
chr3:13327716-13339867:+
Coord C1 exon
chr3:13327716-13327833
Coord A exon
chr3:13334550-13334618
Coord C2 exon
chr3:13339750-13339867
Length
69 bp
Sequences
Splice sites
3' ss Seq
ATTTGTTTTTAATGTTTTAGCAA
3' ss Score
7.8
5' ss Seq
AATGTAAGA
5' ss Score
5.55
Exon sequences
Seq C1 exon
GGAGATGCTACGCGATCCAGAAATGAGAAATAAATTAATTTCTAACCCAACTAATTTTAACCACATAGCACATATGGGTCCTGGAGATGGTATACAGATTCTCAAAGACCTTCCAATG
Seq A exon
CAACAGCAAGGGCAGCAGGCCCATGTGATACCGTGTAAGGAAGGTGCTCAGAGGACTGGGGGTGACAAT
Seq C2 exon
AATCTTCGGCCTCAGGAAAGTCGGACCGTATTCAGTGGCTCTGTCAGTATCCCATCGATCACGAAATCCCGCACAGAACCAGGACGATCGATGAGCGCAAGCAGTGGGTTAGCAGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009158-'39-51,'39-48,40-51
Average complexity
C1*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.956 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0078623=PBD=WD(100=47.5)
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCACATATGGGTCCTGGAGA
R:
TTGCTGCTAACCCACTGCTTG
Band lengths:
170-239
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]