RnoEX0018983 @ rn6
Exon Skipping
Gene
ENSRNOG00000002841 | Cdc42bpa
Description
CDC42 binding protein kinase alpha [Source:RGD Symbol;Acc:621406]
Coordinates
chr13:98437251-98444875:+
Coord C1 exon
chr13:98437251-98437368
Coord A exon
chr13:98440923-98441108
Coord C2 exon
chr13:98444758-98444875
Length
186 bp
Sequences
Splice sites
3' ss Seq
TTTCTTTCTGTGTTTGATAGCCA
3' ss Score
7.81
5' ss Seq
AGGGTATGA
5' ss Score
6.84
Exon sequences
Seq C1 exon
GGAGATGCTACGAGATCCAGAAATGAGAAATAAATTAATTTCTAACCCAACTAATTTTAACCACATAGCACACATGGGTCCTGGAGATGGAATACAGATCCTAAAAGACCTGCCCATG
Seq A exon
CCAGGTTTCCCTTATTCACCCCCTCCTCACCACTCCGGCCTGATCTCCTCTCCGAGCAACTTTGAGCACATCTATCACATGACTGTCAATTCTGCTGAACAGTTTCTCTCTCCTGATTCCATAAACCCTGGGTACCCCCCGTCCCTGCGCTCTGCCCCTGGTTCACCACACTCTGTGACTCTCAGG
Seq C2 exon
AACCCACGGCCTCAGGAAAGCCGGACAGTATTCAGTGGCTCCGTCAGTATTCCCTCCATCACCAAGTCCCGCCCTGAGCCAGGCCGCTCCATGAGTGCCAGCAGTGGCCTGTCTGCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002841_MULTIEX1-2/2=1-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.975 A=0.919 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
PF0078623=PBD=PU(75.0=77.4)
C2:
PF0078623=PBD=PD(21.9=35.0)
Main Inclusion Isoform:
ENSRNOT00000003837fB2728
Other Inclusion Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGATGCTACGAGATCCAGA
R:
CACTGCTGGCACTCATGGAG
Band lengths:
224-410
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]