HsaEX0014065 @ hg38
Exon Skipping
Gene
ENSG00000143776 | CDC42BPA
Description
CDC42 binding protein kinase alpha [Source:HGNC Symbol;Acc:HGNC:1737]
Coordinates
chr1:227004994-227016197:-
Coord C1 exon
chr1:227016080-227016197
Coord A exon
chr1:227010878-227011063
Coord C2 exon
chr1:227004994-227005111
Length
186 bp
Sequences
Splice sites
3' ss Seq
CTTTCTTTTGTTTTTGATAGCCA
3' ss Score
8.07
5' ss Seq
AGGGTATGA
5' ss Score
6.84
Exon sequences
Seq C1 exon
GGAAATGCTACGAGATCCAGAAATGAGAAATAAATTAATTTCTAATCCAACTAATTTTAATCACATAGCACACATGGGTCCTGGAGATGGAATACAGATCCTGAAAGATCTGCCCATG
Seq A exon
CCAGGTTTCCCTTATCCATCCCCTCATCATCACTCCGGTCTGATCTCCTCTCCGATCAACTTTGAACACATCTATCACATGACTGTTAATTCTGCTGAAAAATTTCTCTCTCCTGATTCCATAAACCCTGAATATTCCCCGTCTCTGCGCTCTGTCCCTGGTACACCAAGCTTTATGACTCTGAGG
Seq C2 exon
AACCCTCGGCCTCAGGAAAGTCGGACAGTATTCAGTGGCTCAGTCAGTATTCCATCTATCACCAAATCCCGCCCTGAGCCAGGCCGCTCCATGAGTGCTAGCAGTGGCTTGTCAGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000143776_MULTIEX3-2/3=C1-3
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.925 A=0.603 C2=0.958
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAATGCTACGAGATCCAGA
R:
GCCACTGCTAGCACTCATGG
Band lengths:
226-412
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development