HsaEX0014065 @ hg19
Exon Skipping
Gene
ENSG00000143776 | CDC42BPA
Description
CDC42 binding protein kinase alpha (DMPK-like) [Source:HGNC Symbol;Acc:1737]
Coordinates
chr1:227192695-227203898:-
Coord C1 exon
chr1:227203781-227203898
Coord A exon
chr1:227198579-227198764
Coord C2 exon
chr1:227192695-227192812
Length
186 bp
Sequences
Splice sites
3' ss Seq
CTTTCTTTTGTTTTTGATAGCCA
3' ss Score
8.07
5' ss Seq
AGGGTATGA
5' ss Score
6.84
Exon sequences
Seq C1 exon
GGAAATGCTACGAGATCCAGAAATGAGAAATAAATTAATTTCTAATCCAACTAATTTTAATCACATAGCACACATGGGTCCTGGAGATGGAATACAGATCCTGAAAGATCTGCCCATG
Seq A exon
CCAGGTTTCCCTTATCCATCCCCTCATCATCACTCCGGTCTGATCTCCTCTCCGATCAACTTTGAACACATCTATCACATGACTGTTAATTCTGCTGAAAAATTTCTCTCTCCTGATTCCATAAACCCTGAATATTCCCCGTCTCTGCGCTCTGTCCCTGGTACACCAAGCTTTATGACTCTGAGG
Seq C2 exon
AACCCTCGGCCTCAGGAAAGTCGGACAGTATTCAGTGGCTCAGTCAGTATTCCATCTATCACCAAATCCCGCCCTGAGCCAGGCCGCTCCATGAGTGCTAGCAGTGGCTTGTCAGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000143776_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.940 A=0.711 C2=1.000
Domain overlap (PFAM):
C1:
PF0078623=PBD=WD(100=47.5)
A:
PF0078623=PBD=PU(80.0=77.4)
C2:
PF0078623=PBD=PD(16.7=25.0)
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAATGCTACGAGATCCAGA
R:
GCCACTGCTAGCACTCATGG
Band lengths:
226-412
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)