BtaEX0008079 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000022777 | CDC42BPA
Description
Bos taurus CDC42 binding protein kinase alpha (DMPK-like) (CDC42BPA), mRNA. [Source:RefSeq mRNA;Acc:NM_001192937]
Coordinates
chr16:30711827-30719963:-
Coord C1 exon
chr16:30719846-30719963
Coord A exon
chr16:30714624-30714809
Coord C2 exon
chr16:30711827-30711944
Length
186 bp
Sequences
Splice sites
3' ss Seq
TCTTTCTGTTGTTTTGATAGCCG
3' ss Score
7.2
5' ss Seq
AGGGTATGA
5' ss Score
6.84
Exon sequences
Seq C1 exon
GGAGATGTTACGAGATCCAGAAATGAGAAATAAGTTAATTTCTAACCCAACTAATTTTAACCACATAGCACATATGGGTCCAGGAGATGGAATACAGATCCTAAAAGACCTGCCCATG
Seq A exon
CCGGGTTTCCCTTATCCATCCCCTCATCATCACTCCGGTCTGATCTCCTCTCCGATCAACTTTGAGCACATCTATCACATGACTGTTAATTCTGCTGAAAAATTTCTCTCTCCTGATTCCATAAACCCTGAATATTCCCCGTCTCTGCGCTCTGTCCCCGGTACACCAAGCTTTATGACTCTGAGG
Seq C2 exon
AACCCTCGGCCTCAGGAAAGTCGGACAGCATTCAGTGGCTCCGTCAGTATTCCGTCTATCACCAAATCCCGCCCTGAACCCGGTCGCTCCATGAGCGCCAGCAGTGGCCTATCAGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000022777_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.965 A=0.742 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSBTAT00000029173fB1549
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGATGTTACGAGATCCAGAA
R:
TTGCTGATAGGCCACTGCTG
Band lengths:
236-422
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development