MmuEX0010400 @ mm9
Exon Skipping
Gene
ENSMUSG00000026490 | Cdc42bpa
Description
CDC42 binding protein kinase alpha [Source:MGI Symbol;Acc:MGI:2441841]
Coordinates
chr1:182081291-182089854:+
Coord C1 exon
chr1:182081291-182081408
Coord A exon
chr1:182085926-182086111
Coord C2 exon
chr1:182089737-182089854
Length
186 bp
Sequences
Splice sites
3' ss Seq
TCTTTCTGTTGTTTTGATAGCCA
3' ss Score
7.03
5' ss Seq
AGGGTATGA
5' ss Score
6.84
Exon sequences
Seq C1 exon
GGAGATGCTACGAGATCCAGAAATGAGAAATAAATTAATTTCTAACCCAACTAATTTTAACCACATAGCACACATGGGTCCTGGAGATGGAATACAGATCCTAAAAGACCTGCCCATG
Seq A exon
CCAGGTTTCCCTTATTCACCCCCTCATCACCACTCCGGCCTGATCTCCTCTCCGAGCAACTTTGAGCACATCTATCACATGACTGTCACTTCTGCTGAACAGTTTCTCTCTCCTGAGTCCATAAGCCCTGGGTCCCCCCCGTCCCTGCGCTCTGCCCCTGGCACACCACACTCTGTGACTCTGAGG
Seq C2 exon
AACCCACGGCCTCAGGAAAGCCGGACAGTATTCAGTGGCTCCGTCAGTATTCCCTCCATCACCAAGTCCCGCCCTGAGCCAGGCCGCTCCATGAGTGCCAGCAGCGGCCTGTCTGCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026490_MULTIEX2-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.986 A=0.921 C2=1.000
Domain overlap (PFAM):
C1:
PF0078623=PBD=WD(100=47.5)
A:
PF0078623=PBD=PU(80.0=76.2)
C2:
PF0078623=PBD=PD(18.3=27.5)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGATGCTACGAGATCCAGA
R:
CTGCTGGCACTCATGGAGC
Band lengths:
222-408
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: