HsaALTD1025014-2/2 @ hg38
Alternative 5'ss
Gene
ENSG00000143776 | CDC42BPA
Description
CDC42 binding protein kinase alpha [Source:HGNC Symbol;Acc:HGNC:1737]
Coordinates
chr1:227004994-227011059:-
Coord C1 exon
chr1:227010904-227011059
Coord A exon
chr1:227010878-227010903
Coord C2 exon
chr1:227004994-227005111
Length
26 bp
Sequences
Splice sites
5' ss Seq
AGGGTATGA
5' ss Score
6.84
3' ss Seq
TCTCTCGCTTTTGTTTATAGAAC
3' ss Score
8.88
Exon sequences
Seq C1 exon
GTTTCCCTTATCCATCCCCTCATCATCACTCCGGTCTGATCTCCTCTCCGATCAACTTTGAACACATCTATCACATGACTGTTAATTCTGCTGAAAAATTTCTCTCTCCTGATTCCATAAACCCTGAATATTCCCCGTCTCTGCGCTCTGTCCCTG
Seq A exon
GTACACCAAGCTTTATGACTCTGAGG
Seq C2 exon
AACCCTCGGCCTCAGGAAAGTCGGACAGTATTCAGTGGCTCAGTCAGTATTCCATCTATCACCAAATCCCGCCCTGAGCCAGGCCGCTCCATGAGTGCTAGCAGTGGCTTGTCAGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000143776-97-112,98-112-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.603 A=NA C2=0.958
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCCTGAATATTCCCCGTCTCT
R:
CAGGGCGGGATTTGGTGATAG
Band lengths:
112-138
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains