GgaALTD0003658-2/2 @ galGal4
Alternative 5'ss
Gene
ENSGALG00000009158 | CDC42BPA
Description
serine/threonine-protein kinase MRCK alpha [Source:RefSeq peptide;Acc:NP_001186372]
Coordinates
chr3:11785225-11790330:+
Coord C1 exon
chr3:11785225-11785381
Coord A exon
chr3:11785382-11785407
Coord C2 exon
chr3:11790213-11790330
Length
26 bp
Sequences
Splice sites
5' ss Seq
AGGGTATGG
5' ss Score
7
3' ss Seq
GTTGTGTGTCTGCATTGCAGAAT
3' ss Score
8.67
Exon sequences
Seq C1 exon
CGCTCCCCTTATCAATTCCCTCATCATCACTCCCGTCTGATCTCCTCTCCGAGCAACTTTGAACACATCTACCACATGACTGTTAATTCAGCTGAAAAATTCCTCTCTTATGATTCCATAAACACTGCATTTTCCCCGCCTCCGTGCTCTGCCCTGG
Seq A exon
GTACTCCAAACTTTATGACTCAGAGG
Seq C2 exon
AATCTTCGGCCTCAGGAAAGTCGGACCGTATTCAGTGGCTCTGTCAGTATCCCATCGATCACGAAATCCCGCACAGAACCAGGACGATCGATGAGCGCAAGCAGTGGGTTAGCAGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009158-55-63,56-63-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.500 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAAACACTGCATTTTCCCCGC
R:
TGCGGGATTTCGTGATCGATG
Band lengths:
112-138
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]