MmuALTD1012811-2/2 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000026490 | Cdc42bpa
Description
CDC42 binding protein kinase alpha [Source:MGI Symbol;Acc:MGI:2441841]
Coordinates
chr1:180155799-180159723:+
Coord C1 exon
chr1:180155799-180155954
Coord A exon
chr1:180155955-180155980
Coord C2 exon
chr1:180159606-180159723
Length
26 bp
Sequences
Splice sites
5' ss Seq
AGGGTATGA
5' ss Score
6.84
3' ss Seq
TCCTCTCCTTTGTGTTTTAGAAC
3' ss Score
11.52
Exon sequences
Seq C1 exon
GTTTCCCTTATTCACCCCCTCATCACCACTCCGGCCTGATCTCCTCTCCGAGCAACTTTGAGCACATCTATCACATGACTGTCACTTCTGCTGAACAGTTTCTCTCTCCTGAGTCCATAAGCCCTGGGTCCCCCCCGTCCCTGCGCTCTGCCCCTG
Seq A exon
GCACACCACACTCTGTGACTCTGAGG
Seq C2 exon
AACCCACGGCCTCAGGAAAGCCGGACAGTATTCAGTGGCTCCGTCAGTATTCCCTCCATCACCAAGTCCCGCCCTGAGCCAGGCCGCTCCATGAGTGCCAGCAGCGGCCTGTCTGCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026490-83-93,84-93-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.921 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTGAGTCCATAAGCCCTGG
R:
GGGACTTGGTGATGGAGGGAA
Band lengths:
120-146
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types