GgaEX6000374 @ galGal4
Exon Skipping
Gene
ENSGALG00000006563 | SEMA3D
Description
Semaphorin-3D [Source:UniProtKB/Swiss-Prot;Acc:Q90663]
Coordinates
chr1:8238288-8252408:+
Coord C1 exon
chr1:8238288-8238448
Coord A exon
chr1:8250524-8250586
Coord C2 exon
chr1:8252289-8252408
Length
63 bp
Sequences
Splice sites
3' ss Seq
TTATTTCAACTATCTTCCAGATT
3' ss Score
8.47
5' ss Seq
CATGTAAGT
5' ss Score
8.31
Exon sequences
Seq C1 exon
ACTTGCTGCTTTCAAACAGCTGCATCCCATTCCTGGGCTCTACAGAGGGGCTAGATTTTCGAACCCTGCTGCTAGATGAGGAGAGGGGCCGGCTGCTAGTCGGGGCAAAAGACCACATCTTCCTGCTCAACTTGGTTGATTTAAACAAAAATGTAAAAAAG
Seq A exon
ATTTACTGGCCTGCAGCAAAAGAAAAAATGGAATTATGCAAACTAGCTGGGAAAGATGCCCAT
Seq C2 exon
ACAGACTGTGCCAATTTTATTAGGGTCCTTCAGCCCTACAACCGAACGCATGTTTATGTCTGTGGCACAGGAGCATTTCACCCTCTCTGTGGATACATTGAACTTGGCACTCACAAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006563-'9-15,'9-14,11-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0140314=Sema=PU(19.3=63.0)
A:
PF0140314=Sema=FE(11.4=100)
C2:
PF0140314=Sema=FE(22.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCCTGCTGCTAGATGAGGAG
R:
GTTCGGTTGTAGGGCTGAAGG
Band lengths:
146-209
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]