HsaEX0057065 @ hg19
Exon Skipping
Gene
ENSG00000153993 | SEMA3D
Description
sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3D [Source:HGNC Symbol;Acc:10726]
Coordinates
chr7:84702278-84727281:-
Coord C1 exon
chr7:84727121-84727281
Coord A exon
chr7:84710833-84710895
Coord C2 exon
chr7:84702278-84702397
Length
63 bp
Sequences
Splice sites
3' ss Seq
TACTTTGAAATGTTTTGCAGATT
3' ss Score
7.87
5' ss Seq
AATGTAAGT
5' ss Score
8.62
Exon sequences
Seq C1 exon
ACTTGCTGCTTTCAAATAGCTGTATTCCCTTTTTGGGTTCATCAGAAGGACTGGATTTTCAAACTCTTCTCTTAGATGAGGAAAGAGGCAGGCTGCTCTTGGGAGCCAAAGACCACATCTTTCTACTCAGTCTGGTTGACTTAAACAAAAATTTTAAGAAG
Seq A exon
ATTTATTGGCCTGCTGCAAAGGAACGGGTGGAATTATGTAAATTAGCTGGGAAAGATGCCAAT
Seq C2 exon
ACAGAATGTGCAAATTTCATCAGAGTACTTCAGCCCTATAACAAAACTCACATATATGTGTGTGGAACTGGAGCATTTCATCCAATATGTGGGTATATTGATCTTGGAGTCTACAAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000153993-'3-5,'3-4,4-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0140314=Sema=PU(15.2=63.0)
A:
PF0140314=Sema=FE(11.6=100)
C2:
PF0140314=Sema=FE(17.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTTGGGAGCCAAAGACCAC
R:
AATGCTCCAGTTCCACACACA
Band lengths:
143-206
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)