GgaEX6002994 @ galGal3
Exon Skipping
Gene
ENSGALG00000014071 | ITPR2
Description
NA
Coordinates
chr1:69938341-69942080:-
Coord C1 exon
chr1:69941890-69942080
Coord A exon
chr1:69940408-69940550
Coord C2 exon
chr1:69938341-69938449
Length
143 bp
Sequences
Splice sites
3' ss Seq
TACTCATCTTTATTTCCTAGGAT
3' ss Score
9.11
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
Exon sequences
Seq C1 exon
CGAAGAACCGTGGGATTGCAATTCCGGTGGATTTGGACAGCCAGGTCAACACCTTGTTCATGAAGAGTCACTCTAACATGGTGCAGAGGGCAGCCATGGGGTGGAGAATGTCAGCCCGCAGCGGACCACGTTTTAAAGAAGCTCTTGGTGGGCCTGCCTGGGATTACAGGAACATAATAGAAAAACTGCAG
Seq A exon
GATGTAGTGTCCTCCTTGGAGCAGCAGTTCACTCCCATGATGCAGGCTGAATTCTCAGTGCTGGTTGATGTGCTGCACAGTCCAGAGCTTCTTTTTCCTGAAGGGAGCGATGCCAGAATACGGTGTGGTGCTTTCATGTCCAA
Seq C2 exon
GTTGATAAATCACACAAAGAAGCTGATGGAGAAAGAAGAAAAGCTCTGCATTAAAATTCTTCAGACATTACGAGAAATGCTTGACAAGAAAACTAACTTTGCAGAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014071-'38-42,'38-41,39-42=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAAGAACCGTGGGATTGCAA
R:
ATGCAGAGCTTTTCTTCTTTCTCCA
Band lengths:
242-385
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]