DreEX6064851 @ danRer10
Exon Skipping
Gene
ENSDARG00000011909 | itpr2
Description
inositol 1,4,5-trisphosphate receptor, type 2 [Source:ZFIN;Acc:ZDB-GENE-050419-192]
Coordinates
chr18:16032668-16036357:+
Coord C1 exon
chr18:16032668-16032846
Coord A exon
chr18:16035429-16035571
Coord C2 exon
chr18:16036249-16036357
Length
143 bp
Sequences
Splice sites
3' ss Seq
ACATCATTTACATGTTTCAGGGG
3' ss Score
6.88
5' ss Seq
TAAGTGAGA
5' ss Score
2.17
Exon sequences
Seq C1 exon
CTAAGAGTCGGGCCATTCCTATTCCAGTGGACCTGGATGGTCAGGTCAATGCGCTATCACTGAAGACACACACCAGCATGGTGCAGCGAGCGGTTAAAGACTGGAGGCTGTCAGCCCGTGGACGACCCCGCAAGGAACCCTTTGGAGCACATGATTACAAGATCATTGAAAAACTACAG
Seq A exon
GGGGTCGTTTCGTATCTGGAGGAGCAGTTTAATCCACGAGTTCAGGCAGAGTTTTCAGTATTAGTAGATGTGCTGCACAGCCCAGAGATGCTGTTTCCTGAGTCTGCTCAGCTGCGCACTGAAGACGGAGCCTTCTTATCTAA
Seq C2 exon
GCTCATCAAGCACACCAAGAAACTAATGGAGAAAGAGGAGAAGTTGTGCATCAAGATCCTACAGACTCTGCGAGAGATGCTGGATAGGAGAGAGATGTTTGATGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000011909-'39-41,'39-40,40-41=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGCCATTCCTATTCCAGTGG
R:
CCTATCCAGCATCTCTCGCAG
Band lengths:
258-401
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]