RnoEX6061808 @ rn6
Exon Skipping
Gene
ENSRNOG00000052795 | Itpr3
Description
inositol 1,4,5-trisphosphate receptor, type 3 [Source:RGD Symbol;Acc:2934]
Coordinates
chr20:5700331-5701051:+
Coord C1 exon
chr20:5700331-5700521
Coord A exon
chr20:5700677-5700825
Coord C2 exon
chr20:5700943-5701051
Length
149 bp
Sequences
Splice sites
3' ss Seq
CTTGCCCCCCTCCCTTCCAGGAC
3' ss Score
12.74
5' ss Seq
CAAGTGAGC
5' ss Score
6.39
Exon sequences
Seq C1 exon
CCAAGAGTAGAGCCATCTTGCTGCCGATGGATCTGGATGCCCACATGAGCGCTCTGCTCAGCAGTGGGGGCAGCTGCTCAGCCGCGGCCCAACGCAGCGCTGCCAACTACAAGACGGCCACGAGGACCTTCCCTCGGGTCATCCCCACCGCCAACCAGTGGGACTACAAGAACATCATTGAGAAGTTACAG
Seq A exon
GACATCATCACGGCCCTAGAAGAGCGGCTGAAGCCTCTGGTGCAGGCCGAGCTCTCGGTGCTGGTGGACATGCTGCACTGGCCCGAGCTGCTCTTTCTAGAGGGCAGTGAGGCCTACCAGCGCTGCGAGAGTGGCGGCTTCCTGTCCAA
Seq C2 exon
GCTCATCCGTCACACCAAGGGTCTCATGGAGTCGGAGGAGAAGCTGTGCGTGAAGGTGCTGCGGACGCTGCAGCAGATGCTGCAGAAGAAGAGCAAGTATGGGGACCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000052795-'44-49,'44-48,45-49=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTAGAGCCATCTTGCTGCC
R:
CTTCACGCACAGCTTCTCCTC
Band lengths:
242-391
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]