BtaEX6096984 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000013245 | ITPR3
Description
Bos taurus inositol 1,4,5-trisphosphate receptor, type 3 (ITPR3), mRNA. [Source:RefSeq mRNA;Acc:NM_174370]
Coordinates
chr23:7743227-7744394:+
Coord C1 exon
chr23:7743227-7743417
Coord A exon
chr23:7743999-7744147
Coord C2 exon
chr23:7744286-7744394
Length
149 bp
Sequences
Splice sites
3' ss Seq
CCCCGCCTTGCCCACCGCAGGAC
3' ss Score
9.44
5' ss Seq
CAAGTGAGT
5' ss Score
9.1
Exon sequences
Seq C1 exon
CCAAGGGCCGGGCCATCTCGCTGCCCATGGACTTGGATGCCCACATCAGCTCGCTGCTCAGCAGTGGTGCCAGCTGTGTGGCTGCCGCCCAGCGGAATGCCTCCAACTACAAGACGGCCACGCGGGCCTTCCCCCGTGTCATGCCCACTGCCAACCAGTGGGACTACAAGAACATCATCGAGAAGCTGCAG
Seq A exon
GACATCATCACTGCCCTGGAGGAGCGGCTGAGGCCCCTGGTGCAGGCCGAGCTGTCCGTGCTGGTGGATGTCCTGCACTGGCCCGAGCTGCTCTTCCTGGAGGGCAGTGACGCCTACCAGCGCTGCGAGAGCGGGGGCTTCCTGTCCAA
Seq C2 exon
GCTGATCCAGCACACCAAGGACCTCATGGAGTCGGAGGAGAAGCTGTGCGTCAAGGTGCTAAGGACGCTGCAGCAGATGCTGCTGAAGAAGACCAAGTATGGGGACCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013245-'42-39,'42-38,43-39=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATGGACTTGGATGCCCACAT
R:
CATCTGCTGCAGCGTCCTTAG
Band lengths:
245-394
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]