GgaEX6027038 @ galGal3
Exon Skipping
Gene
ENSGALG00000003149 | ITPR3
Description
NA
Coordinates
chr26:4452092-4452927:-
Coord C1 exon
chr26:4452743-4452927
Coord A exon
chr26:4452486-4452634
Coord C2 exon
chr26:4452092-4452310
Length
149 bp
Sequences
Splice sites
3' ss Seq
GTGTGCGCTGTGGTTTGTAGGAC
3' ss Score
8.8
5' ss Seq
CAAGTGAGG
5' ss Score
5.85
Exon sequences
Seq C1 exon
CCAAGAGCCGCTCCATCGCGCTGCCCATGGACCTGGATGCCCACGTCAGCTCCCTGCTCAACAGCAGCTCCACCAGTACCGTGCAGAGGAACACGTCCAGCTACAAGACGGCCACGCGGACCTTCCCCCGCGTCTCCACCACCCCCAACCAGTGGGACTACAAGAACATCATAGAGAAGCTGCAG
Seq A exon
GACATCATTAATGCCCTGGAGGACCGCTTGAAACCACTTGTGGAGGCTGAACTGTCCGTGCTGGTGGATGTCCTCCACCGGCCAGAGCTGCTCTTCATGGAGGGCACGGAGGCGTATCAGCGATGTGAGAGCGGAGGTTTCCTGTCCAA
Seq C2 exon
GCTGGTGCAGCACACCAAGGACCTGATGGAGACGGAGGAGAAGCTGTGCATCAAAGTGTTACGGACGCTGCAGCAGATGCTGGTGAAGAGGAACAAGTACGGTGAGAGGGTGAGCACCGCAGCACTATGGCATGTCCCCAGCCCCACTGCTCAGCTGGCAGCTCCCTGCTCACTGCAGCCCGCGGGCACTCAGCCTTGTTCTGTTCCATCGCTGGCGTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003149-'34-37,'34-36,35-37=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.113 A=0.000 C2=0.041
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAACAGCAGCTCCACCAGTAC
R:
GCTCACCCTCTCACCGTACTT
Band lengths:
242-391
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]