DreEX0040357 @ danRer10
Exon Skipping
Gene
ENSDARG00000061741 | itpr3
Description
inositol 1,4,5-trisphosphate receptor, type 3 [Source:ZFIN;Acc:ZDB-GENE-070605-1]
Coordinates
chr8:21290318-21292509:+
Coord C1 exon
chr8:21290318-21290499
Coord A exon
chr8:21292131-21292279
Coord C2 exon
chr8:21292401-21292509
Length
149 bp
Sequences
Splice sites
3' ss Seq
GTTTGTGTAACTGCTCTTAGGAT
3' ss Score
6.92
5' ss Seq
TAAGTGAGT
5' ss Score
6.43
Exon sequences
Seq C1 exon
CCAAGAGTCGCTCTATTCCTCTGCCAGTGGAGTTGGAGGCTCATGTCAACATGATGTTGAGTCACAGTAATTCCCTCACATTGTCCCGATCCAGTCACTCCAACAAAAGCATGTCACGCTTAACACGGCCTGCCGCTCCCACCAACCCCTGGGACTACAAGAACATCATTGAAAAACTACAG
Seq A exon
GATATCATTAACACACTGGAGGAGCGTGTGATGCCTTTGGTGAATGCGGAGCTGTCTGTGCTGGTGGATGTGCTGCATCAGCCTGAGCTGCTGTTTCTGGAAGGCACCGATGCTCGCTCACGCTGTGAATCAGGAGGATTTATTTCTAA
Seq C2 exon
ATTGATCCAGCACACAAAGGCCCTCATGAACTCCGATGAGAAGCTCTGTATCAAAGTCCTCAGAACTCTGCAGGAAATGCTCATTCGCGAGTTGGATTTCGATGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000061741-'41-44,'41-43,43-44
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.279 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGTTGGAGGCTCATGTCA
R:
TCCAACTCGCGAATGAGCATT
Band lengths:
251-400
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]