GgaEX6027038 @ galGal4
Exon Skipping
Gene
ENSGALG00000003149 | ITPR3
Description
inositol 1,4,5-trisphosphate receptor, type 3 [Source:HGNC Symbol;Acc:HGNC:6182]
Coordinates
chr26:4573056-4573781:-
Coord C1 exon
chr26:4573597-4573781
Coord A exon
chr26:4573340-4573488
Coord C2 exon
chr26:4573056-4573164
Length
149 bp
Sequences
Splice sites
3' ss Seq
GTGTGCGCTGTGGTTTGTAGGAC
3' ss Score
8.8
5' ss Seq
CAAGTGAGG
5' ss Score
5.85
Exon sequences
Seq C1 exon
CCAAGAGCCGCTCCATCGCGCTGCCCATGGACCTGGATGCCCACGTCAGCTCCCTGCTCAACAGCAGCTCCACCAGTACCGTGCAGAGGAACACGTCCAGCTACAAGACGGCCACGCGGACCTTCCCCCGCGTCTCCACCACCCCCAACCAGTGGGACTACAAGAACATCATAGAGAAGCTGCAG
Seq A exon
GACATCATTAATGCCCTGGAGGACCGCTTGAAACCACTTGTGGAGGCTGAACTGTCCGTGCTGGTGGATGTCCTCCACCGGCCAGAGCTGCTCTTCATGGAGGGCACGGAGGCGTATCAGCGATGTGAGAGCGGAGGTTTCCTGTCCAA
Seq C2 exon
GCTGGTGCAGCACACCAAGGACCTGATGGAGACGGAGGAGAAGCTGTGCATCAAAGTGTTACGGACGCTGCAGCAGATGCTGGTGAAGAGGAACAAGTACGGTGAGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003149-'39-42,'39-41,40-42=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.113 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATGGACCTGGATGCCCAC
R:
TTCCTCTTCACCAGCATCTGC
Band lengths:
253-402
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]