Special

GgaEX6003278 @ galGal4

Exon Skipping

Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NF29]
Coordinates
chr1:75729696-75731636:-
Coord C1 exon
chr1:75731573-75731636
Coord A exon
chr1:75730194-75730336
Coord C2 exon
chr1:75729696-75729845
Length
143 bp
Sequences
Splice sites
3' ss Seq
CTATTTCTTCTTTCTTTTAGCTT
3' ss Score
10.03
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
Exon sequences
Seq C1 exon
GTGATGGCCAGGGGCAGTATTATGTTAGCAGACACCCATGATCTGACTGTGGATCCTGGAAATG
Seq A exon
CTTACGGGATATTTCAGTTGATCTTACCTGTTGAGATGACAATTGCTCCCCTGGCACAGATGCTTGTGTATACCACTTCACCCAGTGGAGAAGTCATTGCTAGTACAGCAGAATTCCAGGTTGAAAGTTGCCTTCTCAATAAA
Seq C2 exon
GTCAACTTGAGTTTTGTACCCAAAGAAGAACTTCCTGCTTCCAAGACAATCCTGAAACTCCATTCCTCACCAAGGTCCCTGTGTGCCCTCCGTGCTGTGGACAGGAGCGTTCTCCTCATGAAGCCTGAAGATGAGCTCTCTCCCAGCTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011926-'16-14,'16-13,17-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact

ORF disruption upon sequence exclusion

No structure available
Features
Disorder rate (Iupred):
  C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):

C1:
PF077039=A2M_N_2=FE(14.1=100)
A:
PF077039=A2M_N_2=FE(31.5=100)
C2:
PF077039=A2M_N_2=PD(26.2=78.0)


Main Inclusion Isoform:


Main Skipping Isoform:
NA


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGGGGCAGTATTATGTTAGCA
R:
AGCTGGGAGAGAGCTCATCTT
Band lengths:
205-348
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]