GgaEX6003287 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1C544]
Coordinates
chr1:75688374-75690747:+
Coord C1 exon
chr1:75688374-75688458
Coord A exon
chr1:75689264-75689387
Coord C2 exon
chr1:75690630-75690747
Length
124 bp
Sequences
Splice sites
3' ss Seq
TCTGTCCTCTCTGCTTATAGATA
3' ss Score
10.59
5' ss Seq
CAGGTGAAT
5' ss Score
6.6
Exon sequences
Seq C1 exon
TGCTTCCAAAATTTGAAGTAACAGTGAAAATGCCCAAGGTTATCACCATTCTTGATGAGAAGCTGAAGGTGACAGTTTGTGGTCT
Seq A exon
ATACACATTTGGCAAGCCTGTTCCTGGCTATGTGAGCTTCCGTGTCTGCAGGAAATTTGAACACCCAGCCACTGCTTGCTATGGTGAAGAGGCTAAGGCAGTATGCGATGAATTCTCCGGACAG
Seq C2 exon
AAGACAGACAACCATGGCTGCATTTCTAAACTGGTAAAAACCAAGTTATTCCAACTCAAGAGAACTGGATATGAGAACAAGCTCCATGTGGATGCTAAGATTGAAGAGGAGGAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000022964-'16-15,'16-13,17-15=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTTCCAAAATTTGAAGTAACAGTG
R:
TGTTTCCTCCTCTTCAATCTTAGCA
Band lengths:
202-326
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]