HsaEX6065092 @ hg19
Exon Skipping
Gene
ENSG00000126838 | PZP
Description
pregnancy-zone protein [Source:HGNC Symbol;Acc:9750]
Coordinates
chr12:9349167-9353044:-
Coord C1 exon
chr12:9352960-9353044
Coord A exon
chr12:9349608-9349719
Coord C2 exon
chr12:9349167-9349281
Length
112 bp
Sequences
Splice sites
3' ss Seq
ATTTATTTCTCATGTACCAGATA
3' ss Score
5.86
5' ss Seq
CAGGTTAGT
5' ss Score
8.02
Exon sequences
Seq C1 exon
TGCTTCCCAAGTTTGAGGTCAAAGTTCAGGTGCCAAAGATAATCAGTATCATGGATGAAAAAGTGAACATAACAGTCTGTGGAGA
Seq A exon
ATACACTTATGGGAAGCCTGTCCCAGGACTTGCAACTGTGAGCCTGTGTAGAAAATTATCTCGTGTTCTTAATTGTGACAAGCAGGAGGTCTGTGAGGAATTCAGTCAACAG
Seq C2 exon
CTTAACAGCAATGGCTGCATCACCCAACAAGTACACACCAAAATGCTCCAGATTACAAATACGGGCTTTGAAATGAAGCTTAGAGTGGAAGCCAGGATCAGAGAAGAGGGGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000126838-'6-8,'6-7,7-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF077039=A2M_N_2=PD(21.1=89.7)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTTCCCAAGTTTGAGGTCA
R:
CCCTCTTCTCTGATCCTGGCT
Band lengths:
195-307
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)