GgaEX6003292 @ galGal3
Exon Skipping
Gene
ENSGALG00000022962 | A2M
Description
NA
Coordinates
chr1:79439962-79442673:-
Coord C1 exon
chr1:79442589-79442673
Coord A exon
chr1:79441041-79441152
Coord C2 exon
chr1:79439962-79440076
Length
112 bp
Sequences
Splice sites
3' ss Seq
CCTATTTCTTCTTCTCCTAGGTA
3' ss Score
9.96
5' ss Seq
GATGTATGA
5' ss Score
2.41
Exon sequences
Seq C1 exon
TGTTGCCAAAATTTGATGTTACAGTCACTGCACCAGGAAGTCTTACAGTCATGGATTCAGAATTGACAGTGAAAATCTGCGCAGT
Seq A exon
GTACACCTATGGTCAGCCTGTTGAGGGGAAGGTCCAGCTCAGTGTGTGTAGGGATTTTGATTCATACGGGAGGTGCAAGAAAAGCCCAGTTTGTCAATCATTTACCAAAGAT
Seq C2 exon
CTGGATACAGATGGCTGCCTCTCCCACATTCTCAGCTCCAAGGTCTTTGAACTAAATCGCATTGGTTACAAGAGGAATCTTGATGTGAAAGCCATTGTCACAGAGAAAGGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000022962-'7-11,'7-10,8-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCAAAATTTGATGTTACAGTCACT
R:
TTCCTTTCTCTGTGACAATGGCT
Band lengths:
194-306
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]