HsaEX0055028 @ hg19
Exon Skipping
Gene
ENSG00000177359 | RP11-551L14.1
Description
NA
Coordinates
chr12:31270354-31347030:-
Coord C1 exon
chr12:31346946-31347030
Coord A exon
chr12:31341503-31341620
Coord C2 exon
chr12:31270354-31270418
Length
118 bp
Sequences
Splice sites
3' ss Seq
TTGTTATATTCTTCTATTAGATA
3' ss Score
6.9
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
TGTTACCCAAATTTCAAATGACTGTGGATGCACCAGAAAATATCTTAGTTGTGGACTCTGAATTCAAAGTGAATGTCTGTGCCTT
Seq A exon
ATATACCTATGGTGAACCTGTGGACGGGAAGGTCCAACTTAGTGTGTGCAGAGAATCTACGGCTTATCATTCATGTGCTCATCTTATCAGTTCACTCTGTAAAAATTTTACCATTCAG
Seq C2 exon
TAAGGTACCTGCCGTGGGCAGATCTGAGCTTTCTTCTTGGACACCCCATACCCACAGTCCTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000177359_MULTIEX1-6/38=5-35
Average complexity
C3
Mappability confidence:
94%=100=93%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCCAAATTTCAAATGACTGTGGA
R:
CTGGAGGACTGTGGGTATGGG
Band lengths:
146-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)