HsaEX0055027 @ hg19
Exon Skipping
Gene
ENSG00000177359 | RP11-551L14.1
Description
NA
Coordinates
chr12:31270354-31347879:-
Coord C1 exon
chr12:31347711-31347879
Coord A exon
chr12:31346946-31347030
Coord C2 exon
chr12:31270354-31270418
Length
85 bp
Sequences
Splice sites
3' ss Seq
TATATTTTTTTTACTGGCAGTGT
3' ss Score
7.06
5' ss Seq
CTTGTAAGT
5' ss Score
8
Exon sequences
Seq C1 exon
GATCCAGAAGGCAATCGAATACAACAGTGGGTGAATGAGGAGTCTGTGGGAGGGATTCTACAACTCTCCTTCCAGTTAATCTCAGAGCCCATCCTCGGATGGTATGAAATCACCGTGGAGATGCTCAATGAGAAGAAAACATATCACTCCTTCTCTGTGGAAGAATATG
Seq A exon
TGTTACCCAAATTTCAAATGACTGTGGATGCACCAGAAAATATCTTAGTTGTGGACTCTGAATTCAAAGTGAATGTCTGTGCCTT
Seq C2 exon
TAAGGTACCTGCCGTGGGCAGATCTGAGCTTTCTTCTTGGACACCCCATACCCACAGTCCTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000177359_MULTIEX1-5/38=4-35
Average complexity
C3
Mappability confidence:
94%=100=96%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATGAGGAGTCTGTGGGAGGG
R:
GAAAGCTCAGATCTGCCCACG
Band lengths:
169-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)