HsaEX0055023 @ hg19
Exon Skipping
Gene
ENSG00000177359 | RP11-551L14.1
Description
NA
Coordinates
chr12:31270354-31284458:-
Coord C1 exon
chr12:31284285-31284458
Coord A exon
chr12:31283442-31283523
Coord C2 exon
chr12:31270354-31270418
Length
82 bp
Sequences
Splice sites
3' ss Seq
CCTACAATGTTCTATTTTAGGTT
3' ss Score
10.8
5' ss Seq
ATGGTGAGA
5' ss Score
7.23
Exon sequences
Seq C1 exon
GGGATATTCTAGGACTTGCCATGCAGAATCTGGTTGTTCTCCAAATGCCCTATGGAGGTGGAGAGCAGAATGCTGCCCTACTAGCATCTGATACTTATGTTCTGGACTATCTGAAATCTACTGAGCAACTGACAGAGGAAGTTCAATCTAAGGCTTTCTTTCTCTTATCTAATG
Seq A exon
GTTATCAAAGGCAATTATCTTTCAAAAACTCTGATGGTTCCTATAGTGTGTTTTGGCAGCAGAATCAGAAAGGAAGCATATG
Seq C2 exon
TAAGGTACCTGCCGTGGGCAGATCTGAGCTTTCTTCTTGGACACCCCATACCCACAGTCCTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000177359_MULTIEX1-30/38=29-35
Average complexity
C2
Mappability confidence:
88%=100=82%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAAATGCCCTATGGAGGTGG
R:
GAAAGCTCAGATCTGCCCACG
Band lengths:
167-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)