HsaEX0055021 @ hg19
Exon Skipping
Gene
ENSG00000177359 | RP11-551L14.1
Description
NA
Coordinates
chr12:31270354-31286102:-
Coord C1 exon
chr12:31286051-31286102
Coord A exon
chr12:31285179-31285262
Coord C2 exon
chr12:31270354-31270418
Length
84 bp
Sequences
Splice sites
3' ss Seq
AATCAGTATTTTCATTCTAGGTG
3' ss Score
7.25
5' ss Seq
TGGGTAAGT
5' ss Score
10.24
Exon sequences
Seq C1 exon
CCTGAAGGTATTGAAAAGGAAAGGACCCAGAGTTTCCTTATCTGTACAGAAG
Seq A exon
GTGCCAAAGCCTCCAAGCAGGGAGTTTTGGACTTGCCAAATGATGTAGTAGAAGGGTCAGCCAGAGGCTTTTTCACTGTTGTGG
Seq C2 exon
TAAGGTACCTGCCGTGGGCAGATCTGAGCTTTCTTCTTGGACACCCCATACCCACAGTCCTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000177359_MULTIEX1-28/38=27-35
Average complexity
C2
Mappability confidence:
89%=100=89%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGTATTGAAAAGGAAAGGACCCA
R:
CTGGAGGACTGTGGGTATGGG
Band lengths:
112-196
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)