HsaEX0055020 @ hg19
Exon Skipping
Gene
ENSG00000177359 | RP11-551L14.1
Description
NA
Coordinates
chr12:31285179-31286931:-
Coord C1 exon
chr12:31286813-31286931
Coord A exon
chr12:31286051-31286102
Coord C2 exon
chr12:31285179-31285262
Length
52 bp
Sequences
Splice sites
3' ss Seq
TTTGTGTTATTCTTTGACAGCCT
3' ss Score
7.26
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
GTAAAGTGAATATCACTGTAGTTGCTGAGTCCAAACAAAGCAGTGCTTGCCCAAATGAAGGAATGGAGCAGCAAAAGCTAAACTGGAAAGACACTGTGGTCAAAAGCTTCTTAGTAGAG
Seq A exon
CCTGAAGGTATTGAAAAGGAAAGGACCCAGAGTTTCCTTATCTGTACAGAAG
Seq C2 exon
GTGCCAAAGCCTCCAAGCAGGGAGTTTTGGACTTGCCAAATGATGTAGTAGAAGGGTCAGCCAGAGGCTTTTTCACTGTTGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000177359_MULTIEX1-27/38=26-28
Average complexity
C1
Mappability confidence:
89%=100=90%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.125 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGCTTGCCCAAATGAAGGA
R:
CCTCTGGCTGACCCTTCTACT
Band lengths:
145-197
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)