MmuEX6007309 @ mm9
Exon Skipping
Gene
ENSMUSG00000047228 | BC048546
Description
cDNA sequence BC048546 [Source:MGI Symbol;Acc:MGI:3039594]
Coordinates
chr6:128503263-128505204:-
Coord C1 exon
chr6:128505086-128505204
Coord A exon
chr6:128504358-128504409
Coord C2 exon
chr6:128503263-128503346
Length
52 bp
Sequences
Splice sites
3' ss Seq
TTTTGTTTACTTCCTAACAGGCT
3' ss Score
9.48
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
GTAAAGTAAATGTCACTGTAGTGGCTACATCCAAACAGAGCAGGGCTTGCCCAAATGACGCCAGTAAGGAGCAAGATGTCCACTGGAAAGACACTGTCGTCAAAACCATGCTGGTAGAG
Seq A exon
GCTGAAGGTATTGAAAAAGAAGCAACTCAAAGTTTCCTCATCTGTCCAAAAG
Seq C2 exon
GTACCAAAGCCTCAAAACAAACACTTCTGGAATTGCCAAGCAATGTAGTAGAAGGTTCAGTCAGATCTTTTGTCACCATTGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000047228-'20-21,'20-20,22-21=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.150 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCCAAACAGAGCAGGGCTTG
R:
ACCTTCTACTACATTGCTTGGCA
Band lengths:
147-199
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: