MmuEX6007309 @ mm10
Exon Skipping
Gene
ENSMUSG00000047228 | A2ml1
Description
alpha-2-macroglobulin like 1 [Source:MGI Symbol;Acc:MGI:3039594]
Coordinates
chr6:128553245-128555186:-
Coord C1 exon
chr6:128555068-128555186
Coord A exon
chr6:128554340-128554391
Coord C2 exon
chr6:128553245-128553328
Length
52 bp
Sequences
Splice sites
3' ss Seq
TTTTGTTTACTTCCTAACAGGCT
3' ss Score
9.48
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
GTAAAGTAAATGTCACTGTAGTGGCTACATCCAAACAGAGCAGGGCTTGCCCAAATGACGCCAGTAAGGAGCAAGATGTCCACTGGAAAGACACTGTCGTCAAAACCATGCTGGTAGAG
Seq A exon
GCTGAAGGTATTGAAAAAGAAGCAACTCAAAGTTTCCTCATCTGTCCAAAAG
Seq C2 exon
GTACCAAAGCCTCAAAACAAACACTTCTGGAATTGCCAAGCAATGTAGTAGAAGGTTCAGTCAGATCTTTTGTCACCATTGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000047228-'40-32,'40-31,42-32
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.150 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCCAAACAGAGCAGGGCTTG
R:
ACCTTCTACTACATTGCTTGGCA
Band lengths:
147-199
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types