DreEX6014992 @ danRer10
Exon Skipping
Gene
ENSDARG00000078183 | A2ML1 (10 of 13)
Description
alpha-2-macroglobulin-like 1 [Source:HGNC Symbol;Acc:HGNC:23336]
Coordinates
chr3:3679409-3679810:+
Coord C1 exon
chr3:3679409-3679530
Coord A exon
chr3:3679604-3679655
Coord C2 exon
chr3:3679727-3679810
Length
52 bp
Sequences
Splice sites
3' ss Seq
TTTTTCCCCTCTTCCTCTAGGCT
3' ss Score
12.87
5' ss Seq
AGGGTTAGT
5' ss Score
5.02
Exon sequences
Seq C1 exon
GAACTATAAATGTGACCATCAGTGCCCAGGCCAGCCCATCAGAGCAATTGTGTGACAATCAGCTTGTGACTGTACCATCAAGAGGACACACTGACATCGTCACTCGAAGTCTGCTGGTTCTG
Seq A exon
GCTGAAGGAGTTGAAAGGACCTTCATCCGGAATTGGTTACTCTGTCCAAAGG
Seq C2 exon
GAAGCATTCTTTCAGAGAGCGTGAAGATCACATTTCCAACAAAAGTCATCCAGGGATCAGCCAGATGCTCCGTATCAGCCATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000078183-'25-30,'25-29,26-30=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATGTGACCATCAGTGCCCAG
R:
TCACGCTCTCTGAAAGAATGCT
Band lengths:
138-190
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]