HsaEX0051452 @ hg19
Exon Skipping
Gene
ENSG00000126838 | PZP
Description
pregnancy-zone protein [Source:HGNC Symbol;Acc:9750]
Coordinates
chr12:9313629-9316385:-
Coord C1 exon
chr12:9316264-9316385
Coord A exon
chr12:9315193-9315244
Coord C2 exon
chr12:9313629-9313712
Length
52 bp
Sequences
Splice sites
3' ss Seq
TTTCTTTCCTTTCATCCAAGGCT
3' ss Score
6.32
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
GGAATGTGAACTTCTCAGTGAGTGCAGAGGCAATGCAGTCCTTAGAACTCTGTGGAAATGAGGTTGTTGAGGTCCCTGAGATTAAAAGAAAAGACACAGTCATCAAAACCCTGTTGGTGGAG
Seq A exon
GCTGAAGGTATTGAGCAAGAAAAGACTTTCAGTTCTATGACCTGTGCCTCAG
Seq C2 exon
GTGCTAATGTGTCTGAGCAGTTGTCCTTGAAGCTCCCATCAAATGTGGTCAAAGAATCTGCCAGAGCTTCTTTCTCAGTTCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000126838_MULTIEX1-3/4=2-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.074 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0020717=A2M=PD(2.2=11.1)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGAGGCAATGCAGTCCTTA
R:
GGAGCTTCAAGGACAACTGCT
Band lengths:
135-187
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)