GgaEX6003324 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr1:79474739-79475926:-
Coord C1 exon
chr1:79475805-79475926
Coord A exon
chr1:79475117-79475168
Coord C2 exon
chr1:79474739-79474822
Length
52 bp
Sequences
Splice sites
3' ss Seq
ACCTGTCTGCAATCAAACAGCCT
3' ss Score
4.3
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
Exon sequences
Seq C1 exon
GTGAGGTGAAATTCACAATTACTGCTGAAGCCAAACTGAATACTAAAGGTGCCAAAAATAGCACACCACCGGAAGAGGAGTCAATTCGCACGGACACCCTGACTCAAACGCTACTAGTTGAG
Seq A exon
CCTGAAGGTATTAAAAAAGAATTGACTCAGAGCTCCCTCATCTGCACAAAAG
Seq C2 exon
GCACAACAGTTTCTGAACCAGTGCTTCTCAGCCTGCCAAGAAATGTAGTGCAGGGATCAGCCAGAGTTTATTTCTCTGTCATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011930-'19-20,'19-19,20-20=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.463 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCAAAAATAGCACACCACCG
R:
TGGCTGATCCCTGCACTACAT
Band lengths:
135-187
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]