BtaEX6024048 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000005243 | OVOS2
Description
Bos taurus ovostatin 2 (OVOS2), mRNA. [Source:RefSeq mRNA;Acc:NM_001164024]
Coordinates
chr5:101168547-101171842:+
Coord C1 exon
chr5:101168547-101168665
Coord A exon
chr5:101169657-101169708
Coord C2 exon
chr5:101171759-101171842
Length
52 bp
Sequences
Splice sites
3' ss Seq
TTTACTTTACTCTTTGATAGCCT
3' ss Score
5.67
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
GTAAAGTGAATATCACTGTAGTTGCTGAGTCCAGGCAAAATAGTGCTTGCCCAAATGAAGCACCTGAGAGGCAGAACATGAACTGGAAAGATACTGTGATCAAAAGTCTGTTGGTACAG
Seq A exon
CCTGAAGGTATTGAAAAAGAGATGACTCAAAGTTTCCTTATCTGTACACAAG
Seq C2 exon
GCACCAAAGTCTCCAGGCAGGTAGATTTGAATTTGACAAATGATGTCGTAGAAGGATCAACCAGGGCCTTTTTCACTGTTGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005243-'19-21,'19-20,20-21=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.275 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCAAATGAAGCACCTGAGA
R:
AAGGCCCTGGTTGATCCTTCT
Band lengths:
141-193
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]