GgaEX1002686 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NEW8]
Coordinates
chr1:75826594-75831460:-
Coord C1 exon
chr1:75831284-75831460
Coord A exon
chr1:75827626-75827707
Coord C2 exon
chr1:75826594-75826750
Length
82 bp
Sequences
Splice sites
3' ss Seq
CATCTTTGTTGTATTTTCAGGGT
3' ss Score
9.38
5' ss Seq
ATGGTAAAG
5' ss Score
5.39
Exon sequences
Seq C1 exon
GAGATATTTTGGGTACAGCATTAAGGAACATGGAAAACCTCCTCCACATGCCTTACGGCTGTGGAGAACAGAACATGGCGTTGTTCACACCCAACATCTATGTCCTGGATTATCTGAATAAGACTGGGCAGCTGACGGAAGAGATTAGAGTCAAGAGTACTGGATATTTAACCACAG
Seq A exon
GGTACCAGAAACAGCTTTCATACAAACACCAGGATGGGTCCTACAGCTCCTTTGGGACACGAGACAAGGAAGGAAATGTATG
Seq C2 exon
GCTCACTGCCTTTGTATATAAGTCATTTGCACAAGCAAGACGGTACATCTATGTTGATGAAAATGTCCAGTCTCAAACTCTGATCTGGCTGGCAAGAAAGCAGAAGTCAGATGGCTGCTTTGAAAATGCTGAGTCACATTTCAACAATGCTTTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011930-'23-27,'23-25,29-27
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF105694=Thiol-ester_cl=WD(100=51.7),PF076789=A2M_comp=PU(0.4=1.7)
A:
PF076789=A2M_comp=FE(10.8=100)
C2:
PF076789=A2M_comp=FE(20.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATAAGACTGGGCAGCTGACG
R:
GCAGCCATCTGACTTCTGCTT
Band lengths:
179-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]