GgaEX1002686 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr1:79468293-79473820:-
Coord C1 exon
chr1:79473644-79473820
Coord A exon
chr1:79469325-79469406
Coord C2 exon
chr1:79468293-79468449
Length
82 bp
Sequences
Splice sites
3' ss Seq
CATCTTTGTTGTATTTTCAGGGT
3' ss Score
9.38
5' ss Seq
ATGGTAAAG
5' ss Score
5.39
Exon sequences
Seq C1 exon
GAGATATTTTGGGTACAGCATTAAGGAACATGGAAAACCTCCTCCACATGCCTTACGGCTGTGGAGAACAGAACATGGCGTTGTTCACACCCAACATCTATGTCCTGGATTATCTGAATAAGACTGGGCAGCTGACGGAAGAGATTAGAGTCAAGAGTACTGGATATTTAACCACAG
Seq A exon
GGTACCAGAAACAGCTTTCATACAAACACCAGGATGGGTCCTACAGCTCCTTTGGGACACGAGACAAGGAAGGAAATGTATG
Seq C2 exon
GCTCACTGCCTTTGTATATAAGTCATTTGCACAAGCAAGACGGTACATCTATGTTGATGAAAATGTCCAGTCTCAAACTCTGATCTGGCTGGCAAGAAAGCAGAAGTCAGATGGCTGCTTTGAAAATGCTGAGTCACATTTCAACAATGCTTTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011930-'22-23,'22-22,25-23=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF105694=Thiol-ester_cl=WD(100=51.7),PF076789=A2M_comp=PU(0.4=1.7)
A:
PF076789=A2M_comp=FE(10.8=100)
C2:
PF076789=A2M_comp=FE(20.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATAAGACTGGGCAGCTGACG
R:
GCAGCCATCTGACTTCTGCTT
Band lengths:
179-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]