BtaEX0001204 @ bosTau6
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1MI18]
Coordinates
chr5:101256599-101259468:+
Coord C1 exon
chr5:101256599-101256775
Coord A exon
chr5:101257067-101257154
Coord C2 exon
chr5:101259291-101259468
Length
88 bp
Sequences
Splice sites
3' ss Seq
CAAACATTCTTCTTCTTCAGGTT
3' ss Score
10.43
5' ss Seq
TTGGTAAGA
5' ss Score
8.85
Exon sequences
Seq C1 exon
GTGATATACTAGGCTCTGCAATGCAAAATCTTCAGAATCTTCTCCGGATGCCCTATGGTTGTGGAGAACAGAATATGGTCCTTTTCACCCCTAACATCTACGTTCTGAACTATCTAAATGAGACAGGACAGCTCACTGAGAAGATCAAGTCCAAAGCCATCAGCTACCTCATCAGTG
Seq A exon
GTTACCAAAGACAGTTGAACTATAAGCACAGTGATGGTTCTTACAGCACCTTTGGGGATCGTGATGGTAGAAGTCAGGGAAACACTTG
Seq C2 exon
CACTCAATTGTCCGCAATGCTCTCTTCTGCCTGGAAAGGGCCTGGCAATCTGCCTCAGAGGCCCAAGGAAGTTTTGTCTATACCAAGGCGTTATTGGCCTATGCCTTCGCACTAGCAGGAGACCAAGCCAAACGAAACGAACTGCTTGAGTCACTACACAAAGAGGCTGTAAAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000038461_MULTIEX1-15/18=14-18
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.033 C2=0.067
Domain overlap (PFAM):
C1:
PF105694=Thiol-ester_cl=WD(100=51.7),PF076789=A2M_comp=PU(0.4=1.7)
A:
PF076789=A2M_comp=FE(11.3=100)
C2:
PF076789=A2M_comp=FE(23.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCTCCGGATGCCCTATGGTT
R:
CCTTTCCAGGCAGAAGAGAGC
Band lengths:
177-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development