DreEX6075786 @ danRer10
Exon Skipping
Gene
ENSDARG00000104200 | si:ch211-285j16.4
Description
si:ch211-285j16.4 [Source:ZFIN;Acc:ZDB-GENE-141219-32]
Coordinates
chr15:17969432-17970803:+
Coord C1 exon
chr15:17969432-17969608
Coord A exon
chr15:17970374-17970455
Coord C2 exon
chr15:17970647-17970803
Length
82 bp
Sequences
Splice sites
3' ss Seq
ATGTTGTTGTTGTGTTGCAGGCT
3' ss Score
9.87
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
Exon sequences
Seq C1 exon
GAGATCTGATGGGTCGTGCTTTGAGAAACATTGGTGATCTTCTGGCTATGCCATACGGCTGTGGAGAGCAGAACATGCTGCAGTTTGCCCCAAATATTTACATCCTTCAATACCTGGAGAGCAGCGGACAGCTCACTCCTGAGATCAGAGCCCGAGCCGTAACCTTCCTACAGAGCG
Seq A exon
GCTATCAGAGAGAGCTGACATATAAGCATGGTGATGGATCTTACAGTGCTTTTGGCTCAAACGATCCTTCTGGTAACACATG
Seq C2 exon
GCTAACTGCATTTGTGATGAAGTCTTTTGGTGGGGCAAAGAGGTATATATTTATAGATCAGACCAGCATTGATGAGGCAAAGAATTGGCTGAGTCAGCAGCAGAAGACAAATGGCTGCTTCACCTCTGTGGGGCAACTGATCCACATTGAAATGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000104200-'27-29,'27-28,28-29=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATACGGCTGTGGAGAGCAGAA
R:
ACCTCTTTGCCCCACCAAAAG
Band lengths:
169-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]