MmuEX6007283 @ mm9
Exon Skipping
Gene
ENSMUSG00000030359 | Pzp
Description
pregnancy zone protein [Source:MGI Symbol;Acc:MGI:87854]
Coordinates
chr6:128440541-128441690:-
Coord C1 exon
chr6:128441514-128441690
Coord A exon
chr6:128441183-128441273
Coord C2 exon
chr6:128440541-128440697
Length
91 bp
Sequences
Splice sites
3' ss Seq
GACTGAAATTCCCTCTCCAGGGT
3' ss Score
7.84
5' ss Seq
TTGGTAATA
5' ss Score
4.19
Exon sequences
Seq C1 exon
GTGATATACTGGGCTCTGCAATGCAAAACCTCCAGAATCTTCTCCAGATGCCCTATGGCTGTGGGGAACAAAACATGGTCCTTTTTGTCCCTAACATCTATGTTCTGAACTATCTGAACGAGACACAGCAGCTGACAGAGGCGATCAAGTCCAAAGCCATTAACTACCTCATCAGTG
Seq A exon
GGTACCAGAGGCAGCTGAACTATCAGCACAGTGATGGCTCGTACAGCACATTCGGGAACCATGGTGGTGGCAACACTCCGGGAAATACTTG
Seq C2 exon
GCTCACTGCGTTTGTGCTCAAGGCCTTTGCTCAAGCTCAGTCGCACATCTTTATAGAGAAGACACACATCACAAATGCTTTCAACTGGCTCTCCATGAAACAAAAGGAGAATGGCTGTTTCCAACAGTCTGGATATCTGCTTAACAATGCGATGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030359-'25-24,'25-23,26-24=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.161 C2=0.000
Domain overlap (PFAM):
C1:
PF105694=Thiol-ester_cl=WD(100=51.7),PF076789=A2M_comp=PU(0.4=1.7)
A:
PF076789=A2M_comp=FE(11.4=100)
C2:
PF076789=A2M_comp=FE(19.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCTGTGGGGAACAAAACAT
R:
TGCGACTGAGCTTGAGCAAAG
Band lengths:
167-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: