GgaEX6003301 @ galGal4
Exon Skipping
Gene
ENSGALG00000022962 | OVST
Description
ovostatin precursor [Source:RefSeq peptide;Acc:NP_990557]
Coordinates
chr1:75784488-75785805:-
Coord C1 exon
chr1:75785629-75785805
Coord A exon
chr1:75785043-75785124
Coord C2 exon
chr1:75784488-75784644
Length
82 bp
Sequences
Splice sites
3' ss Seq
TCTCTTTCACATTCTTTCAGGCT
3' ss Score
10.05
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
GTGACATCATGGGCACTGCCATTCAGAACGTGCACCAGCTCCTTCAGATGCCATTTGGCAATGGGGAACAGAACATGGTCCTGTTTGCACCCAATATCTATGTACTGGATTATCTGGACAAGACAAGACAGCTGAGTGAAGATGTGAAGTCCAAGACCATTGGATACTTAGTGAGCG
Seq A exon
GCTACCAGAAGCAGCTATCATACAAACATCCTGATGGATCCTACAGCACATTTGGCATTAGAGATAAAGAAGGGAACACCTG
Seq C2 exon
GCTCACTGCCTTTGTGTACAAATCATTTGCAGAAGCTAGTCGCTTCATATATATTGATGACAATGTCCAGGCTCAAACCCTGATATGGCTGGCAAGAAAACAGAAGACAGATGGCTGCTTCCAAAGTACTGGGATACTTGTCAACAATGCCATGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000022962-'34-33,'34-32,35-33=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF105694=Thiol-ester_cl=WD(100=51.7),PF076789=A2M_comp=PU(0.4=1.7)
A:
PF076789=A2M_comp=FE(10.9=100)
C2:
PF076789=A2M_comp=FE(21.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGTCCTGTTTGCACCCAAT
R:
GGGTTTGAGCCTGGACATTGT
Band lengths:
183-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]