RnoEX6015274 @ rn6
Exon Skipping
Gene
ENSRNOG00000007247 | A2ml1
Description
alpha-2-macroglobulin-like 1 [Source:RGD Symbol;Acc:1565709]
Coordinates
chr4:161876570-161879019:-
Coord C1 exon
chr4:161878843-161879019
Coord A exon
chr4:161877439-161877520
Coord C2 exon
chr4:161876570-161876726
Length
82 bp
Sequences
Splice sites
3' ss Seq
CTTACTCTGTTGTGTTTTAGGTT
3' ss Score
12.89
5' ss Seq
CTGGTGAGA
5' ss Score
7.54
Exon sequences
Seq C1 exon
GAGACATTCTGGGAGTCGCAATGCAGAATCTAGAGAGCCTTCTCCAGACACCCTATGGCTGCGGTGAACAGAACATTGCCCAGCTGGCAGCTGACATTTATATACTTGACTACCTCAACGCTACCAAACAGCTGACAGAAGAGGTCAGATCCAAGGCTCTTCTTCTCTTATCTAAAG
Seq A exon
GTTACCAGAAACACTTGTCTTTCAAGAACTATGATGGCTCATACGATGTGTTCTGCCATAACAACCAGGAAGGAAGTGTCTG
Seq C2 exon
GCTCAGTGCCCTTTCTTTCAAGACATTTGAGAAAATGAAGGAATATATTTTCATCGAAGAGACGGTCCCCAAACAGACCTTGATTTGGCTTGTGAAGAAGCAGAAATCAAACGGCTGCTTTAGAAAGAATGAGAATCTTGTCAACAATGCTCAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007247-'29-27,'29-26,30-27=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.057
Domain overlap (PFAM):
C1:
PF105694=Thiol-ester_cl=WD(100=51.7),PF076789=A2M_comp=PU(0.4=1.7)
A:
PF076789=A2M_comp=FE(10.9=100)
C2:
PF076789=A2M_comp=FE(21.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGCTACCAAACAGCTGACAG
R:
AGCAGCCGTTTGATTTCTGCT
Band lengths:
179-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]