RnoEX0001104 @ rn6
Exon Skipping
Gene
ENSRNOG00000007247 | A2ml1
Description
alpha-2-macroglobulin-like 1 [Source:RGD Symbol;Acc:1565709]
Coordinates
chr4:161898027-161902613:-
Coord C1 exon
chr4:161902445-161902613
Coord A exon
chr4:161901800-161901884
Coord C2 exon
chr4:161898027-161898144
Length
85 bp
Sequences
Splice sites
3' ss Seq
TTTGTATGTTTTGTTTTCAGTAT
3' ss Score
8.74
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
Exon sequences
Seq C1 exon
AATCCCCAAGGCAATGTGATTTTTCAATGGATAAACGTGACCACTTTCAGAAACATCACCCAGCTCTCATTCCAACTGACTCCAGAGCCAGTATTGGGGGATTACATGATCGTCATAAAAAAACAATCAGGAATGACGGTGGTGGATCATTTCACCGTTAACCAAGATG
Seq A exon
TATTGCCCAGATTTGAAGTTGAGCTTACTGCTCCAGAGACCATAACTATCGCAGACAATCAGTTTCCAGTGGTTATGTGTGCAAA
Seq C2 exon
GTACATCTATGGCCAACCTGTGCGTGGAAAAGCCCAGATCAAAGTGTGCAGAGAGCTCTTCTCCCCGGGGTATTGTGAGAGCAACGAGAATGAAATCTGCGAGCAGTTCACTCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007247-'10-6,'10-5,11-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0183514=A2M_N=PD(55.3=91.2)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCCAACTGACTCCAGAGCCA
R:
ACAATACCCCGGGGAGAAGAG
Band lengths:
176-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]