BtaEX6024063 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000005243 | OVOS2
Description
Bos taurus ovostatin 2 (OVOS2), mRNA. [Source:RefSeq mRNA;Acc:NM_001164024]
Coordinates
chr5:101141571-101146207:+
Coord C1 exon
chr5:101141571-101141739
Coord A exon
chr5:101142247-101142331
Coord C2 exon
chr5:101146090-101146207
Length
85 bp
Sequences
Splice sites
3' ss Seq
ATATTTCTCTTTGTTTCCAGTGT
3' ss Score
8.82
5' ss Seq
TAAGTAAGT
5' ss Score
8.07
Exon sequences
Seq C1 exon
GATCCTCAAAACAATAGGATTTTTCAATGGCAAAATGTGACCTCTTCTCAAAATATTACCGAACTCTCATTCCAATTGATTTTAGAACCAGTGTTTGGAGATTACTCTATTGTCGTGAAAGAAAAATCAGGAAAGACATTGACACACCAATTTACTGTTAATAGAAATG
Seq A exon
TGTTGCCCAAGTTTGAAGTTAAGGTCAGTGCACCACAAACAATAACTATTGCAGACGATGAATTCCAAGTCAGTGCATGTGCTAA
Seq C2 exon
GTATACCTTTGGCCAACCTGTACATGGGAAAGTCCAAGTTCAGGTGTGCAGGGGATTTTTTTCCTCTGTGGCTTGTGAGAAAGACAAGAATGAAATATGTGAACAGTTTGTTGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005243-'4-5,'4-4,5-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.070 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0183514=A2M_N=PD(57.8=91.2)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCAAAATGTGACCTCTTCTCA
R:
CCCATGTACAGGTTGGCCAAA
Band lengths:
170-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]