MmuEX6007296 @ mm9
Exon Skipping
Gene
ENSMUSG00000047228 | BC048546
Description
cDNA sequence BC048546 [Source:MGI Symbol;Acc:MGI:3039594]
Coordinates
chr6:128521984-128526330:-
Coord C1 exon
chr6:128526162-128526330
Coord A exon
chr6:128525558-128525642
Coord C2 exon
chr6:128521984-128522101
Length
85 bp
Sequences
Splice sites
3' ss Seq
TTTTGTTTTGTTTTTTTCAGTTT
3' ss Score
11.34
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
Exon sequences
Seq C1 exon
GATCCCCAAAGCAATGTGATTTTTCAGTGGATCAATGTGACCACTTTCAGAAACATTACCCAGCTCTCCTTCCAACTGACGCCGGAACCAATATTGGGGGATTACACAATCGTCATAAAAACACAATCGGGAACGACAGTGATGGATCATTTCACTGTTAACCGAGACG
Seq A exon
TTTTGCCCAAATTTGAAGTCGAGCTCACTGCACCAGAGACAATAACCATTGCGGACAGTCAATTTCAAATGGTTACATGTGCAAA
Seq C2 exon
GTACACCTATGGCCAGCCTGTGCAGGGAAAAGCCCAGATAAAAGTGTGCAGAGAGCTCTTCTCCCCGGCACATTGTGAGAGCAATGAGAATGAAATCTGTGAGCAGTTCACTGTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000047228-'5-6,'5-5,6-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0183514=A2M_N=PD(55.3=91.2)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAACTGACGCCGGAACCAATA
R:
ATTGCTCTCACAATGTGCCGG
Band lengths:
182-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: