GgaEX6003310 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr1:79488186-79490500:-
Coord C1 exon
chr1:79490332-79490500
Coord A exon
chr1:79489014-79489098
Coord C2 exon
chr1:79488186-79488303
Length
85 bp
Sequences
Splice sites
3' ss Seq
TATTCAATTTGTATTCCCAGTTC
3' ss Score
5.95
5' ss Seq
CTTGTAAGT
5' ss Score
8
Exon sequences
Seq C1 exon
GACCCAGAACAAAATCAGATCTTCCAGTGGTTGGATGTATCATCTATGAATGGCATCATCCAGCTCTCATTCCCATTAATTGAGGAGCCAATTCTGGGGTCCTATCACATCGTTGTGGAGAAGAAGTCAGGGGATAAGGAGCATGAATACTTCACAGTGGAGGAGTATG
Seq A exon
TTCTGCCAAAGTTTGAAGTGACAACCAGCATGCCCAGGAGGATCTCTTTCTTTGATGAAGAAATCAGGGTGAATGTTTGTGCCTT
Seq C2 exon
GTACACTTATGGCCAACCAGTGCAGGGGAGTGCCCGAATCAATGTGTGTCAGCGACACTTTTATAATCCACAATGTCAGCAAAGCCAGAAACCAAGATGTGAAGCTGTCATTGGATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011930-'4-5,'4-4,5-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0183514=A2M_N=PD(55.3=91.2)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGCCAATTCTGGGGTCCTA
R:
TGGCTTTGCTGACATTGTGGA
Band lengths:
173-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]