GgaEX6003312 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr1:79486965-79488303:-
Coord C1 exon
chr1:79488186-79488303
Coord A exon
chr1:79487317-79487437
Coord C2 exon
chr1:79486965-79487074
Length
121 bp
Sequences
Splice sites
3' ss Seq
TCTCTTTGCTCCTTTTTCAGCTG
3' ss Score
10.6
5' ss Seq
CAGGTGATA
5' ss Score
4.58
Exon sequences
Seq C1 exon
GTACACTTATGGCCAACCAGTGCAGGGGAGTGCCCGAATCAATGTGTGTCAGCGACACTTTTATAATCCACAATGTCAGCAAAGCCAGAAACCAAGATGTGAAGCTGTCATTGGATTG
Seq A exon
CTGGAAAACAATGGTTGTCTCAGCACTGTTGTCTCCACCAAAACTTTTCAGTTGTACCGCAGTTATGCCAGGATGTATGCCAGCTTCAACATAGAAACCATCGTCACTGAAAATGGGACAG
Seq C2 exon
GTATCCAGATGAAAAACTATGACTACGTTGCAGTCAGCCAAGAAAATGACAGAGTGATGTTCAGGAACATGGATCAGTACTACAGAAGGGGAATTCCTTACTTTGGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011930-'6-7,'6-6,7-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0236911=Big_1=PU(1.6=2.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCCAACCAGTGCAGGG
R:
TCACCAAAGTAAGGAATTCCCCT
Band lengths:
218-339
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]